APA-Scan: detection and visualization of 3′-UTR alternative polyadenylation with RNA-seq and 3′-end-seq data

BMC Bioinformatics

Table 3 Number of events detected by APA-Scan, DaPars and APAtrap and validated by 3′-end-seq data for MEFs samples

Method	Detected	Validated by 3′-end-seq	Ratio (%)
APA-Scan	265	233	87.92
DaPars	785	244	31.08
APAtrap	1130	290	25.66

ISSN: 1471-2105