SVAT: Secure outsourcing of variant annotation and genotype aggregation

BMC Bioinformatics

Table 2 The matching between the impact terms between ANNOVAR and SVAT

ANNOVAR impact term	SVAT impact term
Frameshift insertion/frameshift deletion	frameshift_variant
Nonframeshift insertion/nonframeshift deletion	inframe_insertion / inframe_deletion
Splicing	splice_acceptor_variant, splice_donor_variant
Startloss	start_lost
Stopgain	stop_gained
Stoploss	stop_lost
Nonsynonymous SNV	missense_variant
Synonymous SNV	synonymous_variant

Each row shows the matching terms that best correspond to the impact implied by the corresponding method

ISSN: 1471-2105