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Table 3 Resource requirements of annotation vector generation

From: SVAT: Secure outsourcing of variant annotation and genotype aggregation

Annotation vector step

Time (Sec)

Peak memory usage (GB)

Disk space (GB)

1. Region extraction

22.85

0.26

0.052

2. Region separation

4.49

0.29

 

3. Variant enumeration

99.75

6.58

6.98

4. Enumerated variant annotation

66,558.10

357.28

34.23

5. Vectorization

3401.69

2.79

2.49