Table 2 Haplotyping results of SATlotyper and Happy-inf with Data set 1
From: PolyHaplotyper: haplotyping in polyploids based on bi-allelic marker dosage data
SATlotyper | Happy-inf | |||||
|---|---|---|---|---|---|---|
SNP markers per haploblock | 4 | 5 | All | 4 | 5 | All |
Nr of haploblock | 26 | 17 | 43 | 26 | 17 | 43 |
Mean nr of haplotypes | 5.4 | 6.4 | 5.8 | 8.0 | 9.9 | 8.7 |
Nr of individuals | 631 | 631 | 631 | 631 | 631 | 631 |
mean % fully genotyped | 75.8 | 72.9 | 74.7 | 75.8 | 72.9 | 74.7 |
mean % haplotyped | 100.0 | 100.0 | 100.0 | 75.8 | 72.9 | 74.7 |
Mean % checkable | 93.7 | 93.7 | 93.7 | 71.3 | 68.6 | 70.2 |
Mean % matching parent(s) (of all checkable) | 81.5 | 81.9 | 81.7 | 91.6 | 91.9 | 91.7 |
Total nr matching parent(s) | 12,525 | 8231 | 20,756 | 10,712 | 6734 | 17,446 |
Total nr conflicting with parents | 2841 | 1816 | 4657 | 984 | 628 | 1612 |
Total nr non-checkable | 1040 | 680 | 1720 | 4710 | 3365 | 8075 |