Table 4 Haplotyping results of PolyHaplotyper, SATlotyper and Happy-inf with Data set 3
From: PolyHaplotyper: haplotyping in polyploids based on bi-allelic marker dosage data
PolyHaplotyper | SATlotyper | Happy-inf | |
|---|---|---|---|
Nr of haploblocks | 60 | 60 | 60 |
Mean nr of haplotypes inferred | 16.0 | 13.9 | 33.3 |
Mean true nr of haplotypes | 16.2 | 16.2 | 16.2 |
Mean % haplotyped | 76.4 | 100.0 | 100.0 |
Mean % correct (of all haplotyped) | 87.3 | 51.5 | 32.0 |
Total nr correct | 8127 | 6272 | 3893 |
Total nr incorrect | 1181 | 5908 | 8287 |
Total nr not haplotyped | 2872 | 0 | 0 |
Run time (s) | 1662 | 2095 | 527 |