Table 8 Case study of the prediction examples from different models
Dataset: BC2GM | Dataset: BC2GM entity type: gene/protein | |
|---|---|---|
Case 1 | True label | Structural organization of the human Elk1 gene and its processed pseudogene Elk2. |
BioBERT-STM | Structural organization of the human Elk1 gene and its processed pseudogene Elk2. | |
BioBERT-MTM | Structural organization of the human Elk1 gene and its processed pseudogene Elk2. | |
BioBERT-CFA-MTM | Structural organization of the human Elk1 gene and its processed pseudogene Elk2. | |
Dataset: NCBI-disease entity type: disease | Entity type: disease | |
case 2 | True label | Inherited colorectal polyposis and cancer risk of the APC I1307K polymorphism. |
BioBERT-STM | Inherited colorectal polyposis and cancer risk of the APC I1307K polymorphism. | |
BioBERT-MTM | Inherited colorectal polyposis and cancer risk of the APC I1307K polymorphism. | |
BioBERT-CFA-MTM | Inherited colorectal polyposis and cancer risk of the APC I1307K polymorphism. | |
Dataset: Linnaeus | entity type: species | |
Case 3 | True label | Other species represented are Colwellia psychrerythraea 34H and Shewanella oneidensis, that belong to the Alteromonadales family. |
BioBERT-STM | Other species represented are Colwellia psychrerythraea 34H and Shewanella oneidensis, that belong to the Alteromonadales family. | |
BioBERT-MTM | Other species represented are Colwellia psychrerythraea 34H and Shewanella oneidensis, that belong to the Alteromonadales family. | |
BioBERT-CFA-MTM | Other species represented are Colwellia psychrerythraea 34H and Shewanella oneidensis, that belong to the Alteromonadales family. | |
Dataset: NCBI-disease | Entity type: disease | |
case 4 | True label | Skin photosensitivity may also be present. |
BioBERT-STM | Skin photosensitivity may also be present. | |
BioBERT-MTM | Skin photosensitivity may also be present. | |
BioBERT-CFA-MTM | Skin photosensitivity may also be present. | |
Dataset: Linnaeus | Entity type: species | |
case 5 | True label | Scanagati then recommended the continuation of the electuary made of emollient, guaiacum resin, balsam, rhubarb, and nitre. |
BioBERT-STM | Scanagati then recommended the continuation of the electuary made of emollient, guaiacum resin, balsam, rhubarb, and nitre. | |
BioBERT-MTM | Scanagati then recommended the continuation of the electuary made of emollient, guaiacum resin, balsam, rhubarb, and nitre. | |
BioBERT-CFA-MTM | Scanagati then recommended the continuation of the electuary made of emollient, guaiacum resin, balsam, rhubarb, and nitre. | |