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Fig. 1 | BMC Bioinformatics

Fig. 1

From: A multilayer dynamic perturbation analysis method for predicting ligand–protein interactions

Fig. 1

Multilayer Dynamics Perturbation Analysis (MDPA). A, B Test points (yellow) are created on the surface of the turkey egg-white lysozyme (PDB code: 1JEF [65], green cartoon). C, F DPA finds predicted regions (red) from first layer surface points, which are compared to the bound ligand. C, D, E MDPA finds predicted regions (red, dark blue, orange) from three layers of surface points and forms new predicted clusters, which are compared to the bound ligands(G)

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