From: Duet: SNP-assisted structural variant calling and phasing using Oxford nanopore sequencing
Supporting read signature | |
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HP | Haplotype |
PC | Confidence score of the haplotype prediction |
VC | Count of SV marks |
Feature for SV phasing | |
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pSV = ΣVC>0/ΣVC ≥ 0 | Proportion of reads with SV marks |
pHP = ΣVC,HP>0/ΣVC>0 | Proportion of phasable reads with SV marks |
ΣPC = ΣVC*PC per HP | Total PC for read set from each haplotype |
μPC = μVC*PC per HP | Average PC for read set from each haplotype |
pΣPC = ΣPC1/ΣPC2 | Ratio of ΣPC for both haplotype |