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Table 4 The number of SNPs identified by method for each case study

From: BICOSS: Bayesian iterative conditional stochastic search for GWAS

Method

Salt stress in A. thaliana

AUD in humans

Number of SNPs

Time (s)

Number of SNPs

Time (m)

SMA-exact

22

555

15

82

SMA-approx.

22

8

15

4

BICOSS

5

142

6

38

GWASinlps

37

544

499

792

  1. Multiple comparison corrections use nominal level 0.05 and are based on the number of SNPs in a given genotype dataset