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Fig. 4 | BMC Bioinformatics

Fig. 4

From: A Poisson reduced-rank regression model for association mapping in sequencing data

Fig. 4

PRRR is robust to rank misspecification. Using synthetic data generated from the PRRR model with a true rank of \(R^\star = 3\), we fit PRRR with a range of rank specifications (x-axis). We made predictions for a held-out dataset and computed the \(R^2\) coefficient of determination, repeating this ten times for each rank. The y-axis shows the \(R^2\) value between the predicted values and the true values on held-out samples. Boxes show the median and upper and lower quartiles, and whiskers extend to 1.5 times the interquartile range. a Maximum a posteriori estimates (MAP); b Variational inference (VI); c Comparison with Gaussian RRR [48] and LASSO [51]

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