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Fig. 2 | BMC Bioinformatics

Fig. 2

From: ChiMera: an easy to use pipeline for bacterial genome based metabolic network reconstruction, evaluation and visualization

Fig. 2

Flow chart of ChiMera processes. ChiMera has 3 submodules that can be used separately. The ones signed with “C” are part of the core module, which performs model creation, evaluation and creation of visualization files. “T” represents the translator module that adds KEEG pathway information to the compounds in the edges file. The file can be loaded into Cytoscape or Gephi for visualization. “K” represents the knockout module, which performs gene and reaction knockouts. “V” represents the use of outputs created by ChiMera to create custom maps by third-party tools based on user needs

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BMC Bioinformatics

ISSN: 1471-2105

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