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Table 8 MP4 performance on the non-pathogenic protein

From: MP4: a machine learning based classification tool for prediction and functional annotation of pathogenic proteins from metagenomic and genomic datasets

Strains

Class 1

Class 2

Class 3

Total sequences

Pathogenicity index

Thermotoga maritima MSB8 uid57723

1086

342

430

1858

0.416

Aquifex aeolicus VF5 uid57765

875

250

401

1526

0.427

Mycoplasma hyopneumoniae 7448 uid58039

291

95

271

657

0.557

Bacillus coagulans 2 6 uid68053

1273

639

1059

2971

0.572

Bacillus halodurans C 125 uid57791

1686

948

1418

4052

0.584

Thermoanaerobacterium thermosaccharolyticum DSM 571 uid51639

1017

752

832

2601

0.609

Bacillus licheniformis DSM 13 ATCC 14,580 uid58199

1608

949

1614

4171

0.614

Corynebacterium urealyticum DSM 7111 uid188688

744

522

669

1935

0.616

Lactobacillus fermentum CECT 5716 uid162003

403

217

431

1051

0.617

Staphylococcus carnosus TM300 uid59401

927

559

975

2461

0.623

Lactobacillus delbrueckii bulgaricus ATCC 11842 uid58647

573

255

701

1529

0.625

Listeria welshimeri serovar 6b SLCC5334 uid61605

1026

601

1147

2774

0.63

Listeria innocua Clip11262 uid61567

1113

649

1281

3043

0.634

Bacillus pumilus SAFR 032 uid59017

1341

754

1584

3679

0.635

Listeria ivanovii PAM 55 uid73473

960

549

1141

2650

0.638

Lactococcus garvieae ATCC 49156 uid73413

690

359

898

1947

0.646

Bacillus subtilis BSP1 uid184010

1362

846

1639

3847

0.646

Streptococcus parauberis KCTC 11537 uid67355

640

358

870

1868

0.657

Mycoplasma hyorhinis GDL 1 uid87003

219

135

293

647

0.662

Lactococcus lactis cremoris UC509 9 uid179384

701

414

994

2109

0.668

Lactococcus lactis IO 1 uid192185

739

440

1045

2224

0.668

Bacillus thuringiensis Al Hakam uid58795

1585

1333

1880

4798

0.67

Corynebacterium argentoratense DSM 44202 uid217419

614

506

755

1875

0.673

Pseudomonas putida S16 uid68747

1683

1388

2147

5218

0.677

Tetragenococcus halophilus uid74441

823

542

1190

2555

0.678

  1. Where, Class 1: Non-pathogenic proteins; Class 2: Antibiotic resistance and toxic proteins and Class 3: Secretory and capsular proteins