Table 3 Minimum detection thresholds used to score the presence/absence of mock community taxa at the species or genus level
Dataset | Number of reads | 0.001% threshold | 0.1% threshold | 1% threshold |
|---|---|---|---|---|
HiFi ATCC MSA-1003 | 2,419,037 | 24 | 2419 | 24,190 |
HiFi Zymo D6331 | 1,978,852 | 19 | 1978 | 19,788 |
ONT R10 Zymo D6300 | 275,318 | 2 | 275 | 2753 |
ONT Q20 Zymo D6300 | 2,000,000 | 20 | 2000 | 20,000 |
Illumina ATCC MSA1003 | 10,038,314 | 100 | 10,038 | 100,383 |
Illumina Zymo D6300 | 20,000,000 | 200 | 20,000 | 200,000 |