Table 3 DEGs found in common at least in two datasets used with fold change regarding primary patients that will metastasize (PM). logFC - log fold change; Multiple testing correction is performed by applying the Benjamini-Hochberg method on the p-values, to control the false discovery rate (FDR)
DATASET1 | DATASET2 | DATASET3 | ||||
|---|---|---|---|---|---|---|
LogFC | FDR | LogFC | FDR | LogFC | FDR | |
GBP4 | −2.45 | 2.34e−09 | −2.52 | 1.72e−07 | −2.07 | 1.63e−03 |
IDO1 | −3.19 | 2.34e−09 | −3.20 | 6.97e−09 | −2.45 | 1.91e−04 |
IGHV4-34 | 3.55 | 2.80e−04 | 4.47 | 8.68e−08 | 3.63 | 2.48e−03 |
LRP4 | −2.57 | 1.04e−05 | −2.66 | 9.23e−05 | – | – |
RNU6-196P | 3.60 | 4.69e−05 | 3.88 | 9.23e−05 | – | – |
WIPF3 | −1.99 | 9.37e−05 | −1.55 | 5.03e−04 | – | – |
LGR6 | −1.91 | 3.76e−05 | – | – | −2.03 | 8.07e−05 |
CD8B | −1.81 | 8.73e−05 | – | – | −1.69 | 5-09e−03 |
CD8A | −1.62 | 2.08e−04 | – | – | −2.13 | 4.20e−04 |
APOL1 | −1.86 | 2.08e−04 | – | – | −1.96 | 1.78e−03 |
NELL2 | – | – | −2.76 | 9.23e−05 | −3.09 | 1.78e−04 |
CXCL11 | – | – | −3.06 | 1.00e−05 | −3.01 | 1.78e−04 |