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Table 6 List of genes ranked by the number of times that were selected by regularized LR methods used. Genes colored in underline and bold represent DEGs found up- and down-regulate in PM tissues, respectively

From: Identification of biomarkers predictive of metastasis development in early-stage colorectal cancer using network-based regularization

EN

iTwiner

DATASET1

DATASET2

DATASET3

DATASET1

DATASET2

DATASET3

PF4

86

RLN3

86

LRRC37A14P

67

RAC1P3

100

MIR602

100

NME2P2

100

RPL6P9

81

MIR602

60

MIR6829

64

XRCC6P2

100

RAC1P3

100

OPCML-IT2

100

LINC01871

76

NCOR1P4

59

MIR5002

63

OR51K1P

98

XRCC6P2

100

RAC1P3

100

CD8B

69

CD200

56

IGBP1P2

56

LINC01100

96

MIR3907

96

HORMAD2

98

XRCC6P2

69

ANTXRLP1

38

NMU

54

EEF1B2P6

92

KCTD9P3

92

LINC01100

93

SFRP5

63

OR1L4

38

MIR8078

48

HSPD1P7

92

GZMAP1

88

NMNAT1P3

92

SOHLH2

60

RPL6P9

38

MPPED1

45

MTCO2P18

83

TRBV11-1

86

MIR602

88

SLITRK1

56

VTI1BP4

38

NME2P2

42

TRBV11-1

82

LRIT1

83

NDUFA5P10

84

MIR1295A

49

RAC1P3

36

CNTN4-AS1

39

FABP7P2

78

PRSS57

82

KDM4F

83

TRAV41

49

RPL21P6

35

MIR658

37

HNRNPA1P42

78

RNU6-428P

80

TRBV11-1

83

TST

48

RCC2P1

34

ZNHIT1P1

35

KDM4F

74

LINC02543

79

APOOP4

79

NCOA4P2

45

TRAV14DV4

34

WDR82P2

34

IGKV2D-30

69

HAUS5-DT

75

IQCF5-AS1

71

BANK1

42

AHCYP2

33

HORMAD2

33

LINC01335

69

DNTT

73

MIR8078

71

ITM2A

42

NBPF13P

33

MIR659

33

RPL31P35

63

TPT1P3

72

H2BC2P

68

MGST1

41

XRCC6P2

31

MIR199B

32

SULT6B2P

61

OR51K1P

71

DNTT

65

LGR6

40

OR13J1

30

IGHV3-33

31

COX6CP7

56

HSPD1P7

70

IGHVIII-2-1

64

RNU6-1266P

38

RPL7AP53

30

TRDV3

30

LILRB1-AS1

52

RN7SKP32

70

KCTD9P3

64

DUOXA1

37

RPS2P35

30

HLA-DPA3

29

RPL7P58

51

OR1S2

66

TDGF1P7

63

LINC02866

37

MIR6851

29

TRAJ50

29

TRAJ20

51

RNU6-552P

65

OR1S2

62

FAM187A

36

MIR5088

27

TRDJ1

29

MIR376B

50

RPL32P17

62

VN2R9P

62

MYADM

36

PIN4P1

27

EEF1GP4

28

PPP1R14BP4

49

NDUFA5P10

60

MIR659

61

HSPD1P7

34

GOT2P1

26

MIR592

25

RNU6-1085P

47

CHMP1AP1

58

RPL7P12

61

PYCARD-AS1

34

BANK1

25

MIR6729

25

RPS27AP14

47

OR10H2

58

RPL21P104

58

CASQ1

33

WIPF3

25

RNA5SP396

25

LDHAP1

45

HORMAD2

56

LINC02059

56

IFNG

33

LINC01855

24

NPIPB6

24

PIN1P1

43

MIR564

56

EEF1B2P6

55

RNVU1-19

33

PPIAP54

24

SNORD31B

24

MTND3P18

42

RNU4-76P

53

TRAJ49

54

SMAD4

33

MIR7854

23

LINC02755

23

HORMAD2

41

SULT6B2P

53

RPL23AP26

52

BEND4

31

MIR877

22

MIR4725

23

MIR8052

39

EEF1B2P6

50

PPP1R14BP4

51

LINC00668

31

RPL26P9

22

RAC1P3

23

TRBJ2-1

38

MTND1P22

50

RNU6-973P

48

MIR6816

31

RBM11

21

RNU6-915P

23

TSHB

38

RNU1-18P

49

HSPE1P4

47

MPZL2

31

RNU6-28P

21

TRGV5

23

RPL23AP26

37

LINC00305

48

CHIAP3

46

BIK

30

RNU6-979P

21

LILRP2

22

RESP18

36

OR8G5

47

RNU6-179P

44

MPDU1

30

UBE2CP2

21

RNU6-33P

22

DNAJC19P3

35

SPANXN3

46

IGHV3-16

42

CDKL2

27

HEATR9

20

RNU6-875P

22

IL36A

35

TSHB

46

TLR12P

42

RAC1P3

27

LINC01845

20

LINC01290

21

MTND2P30

35

HPRT1P1

43

RPS27AP14

40

WIPF3

26

SNX19P2

20

MIR376B

21

HNRNPA3P14

34

TMPRSS11F

43

HNRNPCL1

39

C1DP5

25

TRBV7-4

20

NPM1P35

20

RNU6-337P

33

TRBJ1-6

43

MIR8052

39

DSC2

25

NPR2

19

RNA5-8SN1

20

FAM220BP

32

APOOP4

41

PRSS57

39

LINC01398

25

OR5K1

19

RNA5-8SN2

20

LINC02059

32

HNRNPA3P14

39

MRPL35P4

38

LTA

25

IBA57-DT

18

RNA5-8SN3

20

DNAJA1P6

31

MIR6508

34

DYTN

37

RNA5SP74

25

KCTD9P3

18

RPL9P18

20

LINC00951

31

LINC02868

33

MTHFD2P3

36

TTC30A

25

MT-TS2

18

MIR320C1

19

RNU6-948P

31

RPL31P28

33

XRCC6P2

36

LINC02734

24

OR7E62P

18

OR56A5

19

SMARCAL1-AS1

31

OR51B8P

32

HSPD1P7

34

MIR6776

24

CASP1P2

17

RNU6-1263P

19

DRD5P2

29

SCDP1

31

IQCF5

34

MIR7107

24

LINC00928

17

MIR5579

18

TDGF1P7

28

MIR6511A1

30

CHMP1AP1

32

SIT1

24

OOSP4A

17

RNU7-170P

18

TRAJ61

28

MIR6511A2

30

MIR6729

32

ENO1-AS1

23

CCDC40

16

RPS6P8

18

MIR6816

26

MIR6511A3

30

OR4K12P

32

ITGA6

23

KIR2DL4

16

SLAMF6P1

18

HAUS5-DT

25

MIR6511A4

30

RN7SKP242

32

AXIN2

22

SNORD13P1

16

KRT8P49

17

SLC25A5P9

25

OR1D3P

30

H2AZP5

31

FABP5

22

AKR1D1P1

15

SDR42E1P5

17

ALOX15P2

24

RNU6-917P

30

LRIT1

31