Table 1 Comparison of PhenoExam and other similar tools. “X” means the tool provides the function and “–” means the tool does not. “*” means the similarity scores are between phenotype terms and not between gene sets as does PhenoExam
From: PhenoExam: gene set analyses through integration of different phenotype databases
Tool | As web | As software tool | Open source | Model Organism | Phenotype sets | Gene sets | Multiple database at once | Phenotype Enrichment Analysis | Disease Enrichment Analysis | Differential phenotypes | Diagnosis based on phenotypes | Similarity scores |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
PhenoExam | X | X | X | X | X | X | X | X | X | X | – | X |
modPhEA | X | – | – | X | X | X | – | X | – | X | – | – |
DisGeNET | X | X | X | – | X | X | X | – | X | – | – | – |
Phenomizer | X | – | – | – | X | – | – | – | – | – | X | * |
HPOSim | – | X | X | – | X | X | – | X | – | – | – | * |
PhenoSimWeb | X | – | – | – | X | X | – | – | – | – | – | * |