Table 3 Performance metrics of nf-core/circrna quantification tools on the simulated glioblastoma dataset
Tool | Detected | True positives | Precision (%) | Sensitivity (%) | F1 (%) | Run time (m) | Memory (GB) |
|---|---|---|---|---|---|---|---|
CIRCexplorer2 | 6270 | 6259 | 99.82 | 86.13 | 92.47 | 7 | 20 |
CIRIquant | 6668 | 6663 | 99.93 | 91.69 | 95.63 | 13 | 65 |
circRNA_finder | 6171 | 5997 | 97.18 | 82.52 | 89.25 | 7 | 20 |
DCC | 8397 | 6344 | 75.55 | 87.30 | 81.00 | 34 | 21 |
find_circ | 6217 | 6202 | 99.76 | 85.34 | 91.99 | 6 | 3 |
MapSplice | 6155 | 6153 | 99.97 | 84.67 | 91.69 | 9 | 6 |
Segemehl | 4655 | 4558 | 97.92 | 62.72 | 76.46 | 6 | 50 |