Table 2 Rhodopred performance on BLAST dataset—overall
From: Ion-pumping microbial rhodopsin protein classification by machine learning approach
Microbial-rhodopsins | No. of seq | BLAST sequences | |||||
|---|---|---|---|---|---|---|---|
Actinorhodopsin | Bacteriorhodopsin | Halorhodopsin | Proteorhodopsin | Sensory rhodopsin | Xanthorhodopsin | ||
Actinorhodopsin | 500 | 267 (53.4%) | Â | Â | Â | Â | 233 |
Bacteriorhodopsin | 500 | Â | 487(97.4%) | 28 | Â | Â | Â |
Haloarhodopsin | 500 | Â | Â | 488(97.6%) | Â | Â | Â |
Proteorhodopsin | 500 | Â | Â | Â | 497(99.4%) | Â | Â |
Sensory rhodopsin | 500 | Â | 41 | 1 | Â | 226(45.2%) | 3 |
Xanthorhodopsin | 500 | 1 | Â | Â | Â | Â | 498(99.6%) |