Ion-pumping microbial rhodopsin protein classification by machine learning approach

BMC Bioinformatics

Table 3 ‘Rhodopred’ performance on annotated PWS experimental isolates dataset

PWS Haloarchaeal isolates	Actino rhodopsin	Bacterio rhodopsin	Halo rhodopsin	Proteo rhodopsin	Sensory rhodopsin	Xantho rhodopsin
> PWS11 Rhodopsin	NO	NO	NO	NO	NO	NO
> PWS12 Rhodopsin	NO	YES	NO	NO	NO	NO
> PWS13 Sensory Rhodopsin2	NO	YES	NO	NO	NO	NO
> PWS5 Cruxrhodopsin Cop3	NO	YES	NO	NO	NO	NO
> PWS5 Sensoryrhodopsin II	NO	NO	NO	NO	YES	NO
> SL3 Rhodopsin 1	NO	NO	NO	NO	YES	NO
> SL3 Rhodopsin 2	NO	YES	NO	NO	NO	NO
> SL3 Sensoryrhodopsin 2	NO	NO	NO	NO	YES	NO
> R1 Bacteriorhodopsin	NO	YES	NO	NO	NO	NO
> R1 Halorhodopsin	NO	NO	YES	NO	NO	NO
> R1 Sensoryrhodopsin I	NO	NO	NO	NO	YES	NO
> R1 Sensoryrhodopsin II	NO	NO	NO	NO	YES	NO
> NRC1 Bacteriorhodopsin bop	NO	YES	NO	NO	NO	NO
> NRC1 Bacteriorhodopsin related protein	NO	NO	NO	NO	NO	NO
> NRC1 Halorhodopsin	NO	NO	YES	NO	NO	NO
> NRC1 Sensoryrhodopsin I	NO	NO	NO	NO	YES	NO
> NRC1 Sensory rhodopsin II	NO	NO	NO	NO	YES	NO

ISSN: 1471-2105