Fig. 2
From: Detecting genomic deletions from high-throughput sequence data with unsupervised learning
Identifying deletion candidates. Discordant read-pairs (DR) and border-clipped reads (CR) are collected from BAM file. Two deletion candidate sites, including candidate site 1 (purple) and candidate site 2 (green), are identified by DRs. Each site contains 3 DRs. Left boundary (LB) and right boundary (RB) are used to present the range of site. Left breakpoint (LBP) and right breakpoint (RBP) are used to describe the deletion candidate in current site. 5 CRs are contained by site 1, which are used to adjust LBP and RBP. Deletion Candidate 1 refers to the potential deletion in site 1. Site 2 contains 5 CRs, and its potential deletion is shown as Deletion Candidate 2