Table 1 Selected genes from PPLasso, Lasso, Elastic Net, Adaptive Lasso and WLasso
From: Identification of prognostic and predictive biomarkers in high-dimensional data with PPLasso
Prognostic genes | Predictive genes | |
|---|---|---|
PPLasso | HAPLN3, SLAMF7, GTF3C5, FAM46A, SH3PXD2B, TM4SF1, TNFRSF6B, TNFRSF18, TRPM2 | TLR8, YTHDC1, NUCKS1, BIRC3, SLAMF7, NFATC2IP, BOK, MGRN1, KIAA0492, SLC25A36, HMGN2, P2RY5, RPL21, MS4A7, RPL12P6 |
Lasso | DKFZp434K191, NUCKS1, MAFF, SLAMF7, HIST2H2AC, HIST1H4C, IL8, TNFRSF6B, TNFRSF18, SCAND1 | DKFZp434K191, YTHDC1, VMO1, BOLA2, HIST1H4C, RPL21, MS4A7 |
Elastic Net | DKFZp434K191, NUCKS1,SNURF, MAFF, SLAMF7, IL8, ZBP1, TNFRSF6B, ZAK, TNFRSF18, SCAND1, NME1-NME2, DNM1L, RNF146, NPEPL1 | DKFZp434K191, YTHDC1, PMP22, VMO1, BOLA2, HIST1H4C, RPL21, MS4A7,RAB11FIP1 |
Adaptive Lasso | NUCKS1,SNURF, MAFF, SLAMF7, IL8, ZBP1, TNFRSF6B, NME1-NME2, DNM1L, RNF146 | YTHDC1, PMP22, VMO1, BOLA2, HIST1H4C, MS4A7, RPL21 |
WLasso | SLAMF7, EEF1A1P22, RPL21P87, LRRN3, MYOM2 RPS2P5, NME1-NME2, DNM1L, RNF14 | YTHDC1, SCARA2, KSP37, BIRC3 |