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Table 1 Single generation expansion of biological databases

From: Pickaxe: a Python library for the prediction of novel metabolic reactions

Database

Starting compounds

Generated compoundsa

Generated reactionsb

KEGG

12,731

9,562,940

13,759,651

EcoCyc

1,923

906,086

1,388,653

YMDB

1,035

575,262

892,343

  1. aUnique compounds produced after one expansion
  2. bUnique reactions connecting a starting compound to a generated compound
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BMC Bioinformatics

ISSN: 1471-2105

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