Fig. 3
From: Systematic and benchmarking studies of pipelines for mammal WGBS data in the novel NGS platform
Alignment ratios and the methylated Cs’ ratio about CG/CHG/CHH. a The unique mapping ratio and duplication ratio of four h293 samples in four pipelines. b The radial histogram of the proportion of methylated CG/CHG/CHH in all identified Cs in four h293 samples. c The unique mapping ratio and duplication ratio of four mouse samples in four pipelines. d The radial histogram of the proportion of methylated CG/CHG/CHH in allidentified Cs in four mouse samples. For the result of BSBolt, the final proportions were only mCG and mCH (containing mCHH and mCHG). That is, there was no intermediate result for all CHH sites and CHG sites, preventing us from distinguishing the percentage of mGHG and mCHH