Fig. 4
From: Systematic and benchmarking studies of pipelines for mammal WGBS data in the novel NGS platform
Comparing the methylated Cs profiles of two platforms from different software. a The methylation level of CG/CHG/CHH in each chromosome in four h293 samples from four sorts of software. b The PCA for datasets from four kinds of software. c The scanned CpG sites in four software. d The overlap methylated CpGs and all CpG sites in two replicates from two platform and four pipelines. h293_GM means this data is from GenoLab M platform, whereas h293_NV means that from NovaSeq 6000. e The correlationship of heatmap of all datasets from five pipelines and two platforms. bsm: BSMAP; bis: Bismark; bss: BS Beeker2; bsb: BSBolt; ba: BatMeth2