Table 1 Characteristics of the 13 gene expression datasets used in this study
GEO accession | Title | Disease | Number of samples | Number of samples in classes |
|---|---|---|---|---|
GDS1962 | Glioma-derived stem cell factor effect on angiogenesis in the brain | Glioma | 180 | Negative = 23 positive = 157 |
GDS2547 | Metastatic prostate cancer (HG-U95C) | Prostate cancer | 164 | Negative = 75 positive = 89 |
GDS4824 | Prostate cancer Analysis of malignant and benign prostate tissues | Prostate cancer | 21 | Negative = 8 positive = 13 |
GDS3268 | Colon epithelial biopsies of ulcerative colitis patients | Colitis | 202 | Negative = 73 positive = 129 |
GDS3646 | Celiac disease: primary leukocytes | Celiac disease | 132 | Negative = 22 positive = 110 |
GDS3874 | Diabetic children: peripheral blood mononuclear cells (U133A) | Diabetes | 117 | Negative = 24 positive = 93 |
GDS3875 | Diabetic children: peripheral blood mononuclear cells (U133B) | Diabetes | 117 | Negative = 24 positive = 93 |
GDS5037 | Severe asthma: bronchial epithelial cell | Asthma | 108 | Negative = 20 positive = 88 |
GDS5499 | Pulmonary hypertension: PBMCs | Pulmonary hypertension | 140 | Negative = 41 positive = 99 |
GDS3837 | Non-small cell lung carcinoma in female nonsmokers | Lung cancer | 120 | Negative = 60 positive = 60 |
GDS4516 GDS4718 | Colorectal cancer: laser microdissected tumor tissues (homogenized) | Colorectal cancer | 148 | Negative = 44 positive = 104 |
GDS2609 | Early onset colorectal cancer: normal-appearing colonic mucosa | Colorectal cancer | 22 | Negative = 10 positive = 12 |
GDS3794 | Rheumatoid arthritis: peripheral blood mononuclear cells | Arthritis | 33 | Negative = 15 positive = 18 |