SALON ontology for the formal description of sequence alignments

BMC Bioinformatics

Table 2 Part of SALON data properties

Data property	Domain	Range
atSequenceIndex	AlignmentColumn	Integer
column	AlignmentColumn	String
score	AlignmentScore or ColumnScore	Integer or float
scoreMax	AlignmentScore or ColumnScoreFunction	Integer or float
scoreMin	AlignmentScore or ColumnScoreFunction	Integer or float
scoreCutoff	ReliabilityMeasure	Integer or float
FScore	Feature	Integer or float
columnWeight	AlignmentColumn	Integer
consensusCharacter	AlignmentColumn	Short
gapCharacter	SubAlignment	Short
accessionNumber	AlignmentSequence or Protein	String
identifier	AlignmentSequence	String
length	AlignmentSequence	Integer
organism	AlignmentSequence	String

ISSN: 1471-2105