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Table 2 Example n-polymer reference annotations

From: nPoRe: n-polymer realigner for improved pileup-based variant calling

Reference:

A

T

A

T

A

T

A

T

T

T

T

T

A

A

A

G

C

G

C

G

C

n = 1

l:

0

0

0

0

0

0

0

5

5

5

5

5

3

3

3

0

0

0

0

0

0

idx:

0

0

0

0

0

0

0

0

1

2

3

4

0

1

2

0

0

0

0

0

0

n = 2

l:

4

3

4

3

4

3

4

0

0

0

0

0

0

0

0

3

0

3

0

3

0

idx:

0

0

1

1

2

2

3

0

0

0

0

0

0

0

0

0

0

1

0

2

0