From: nPoRe: n-polymer realigner for improved pileup-based variant calling
Reference: | A | T | A | T | A | T | A | T | T | T | T | T | A | A | A | G | C | G | C | G | C | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
n = 1 | ||||||||||||||||||||||
l: | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 5 | 5 | 5 | 5 | 5 | 3 | 3 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | |
idx: | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 2 | 3 | 4 | 0 | 1 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | |
n = 2 | ||||||||||||||||||||||
l: | 4 | 3 | 4 | 3 | 4 | 3 | 4 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 3 | 0 | 3 | 0 | 3 | 0 | |
idx: | 0 | 0 | 1 | 1 | 2 | 2 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 2 | 0 |