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Table 1 Pull success percentage and time spent pulling by sleep time—KO database (25,439 entries)

From: kegg_pull: a software package for the RESTful access and pulling from the Kyoto Encyclopedia of Gene and Genomes

Sleep time (seconds)

0.0

0.5

1.0

2.0

3.0

5.0

10.0

Percent success

94.68

94.89

96.78

99.78

100.0

100.0

100.0

Pull time (minutes)

12.99

16.03

14.69

10.82

8.51

8.44

8.7

  1. Number of minutes spent attempting to pull all the entries in the KO KEGG database. Percent success is the percentage of the entries in the KO database that were successfully pulled while the others failed. Difference in pull time and percent success varies by the—sleep-time option on the kegg_pull CLI. All other options remained the same, including the use of multiprocessing. Values were collected on a 12 core (hyperthreaded) machine using 12 processes