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Table 6 Performance comparison of SV callers on CCS data about HG002

From: INSnet: a method for detecting insertions based on deep learning network

Coverage

INSnet

cuteSV

SVIM

Sniffles

CCS

28X

 Precision

0.9215

0.893

0.8735

0.9001

 Recall

0.922

0.9247

0.9139

0.9301

 F1

0.9218

0.9086

0.8933

0.9148

10X

 Precision

0.905

0.8881

0.8629

0.8945

 Recall

0.887

0.8499

0.8666

0.8714

 F1

0.896

0.8686

0.8647

0.8828

5X

 Precision

0.8969

0.8281

0.8001

0.911

 Recall

0.8327

0.8825

0.8419

0.6993

 F1

0.8636

0.78

0.8204

0.7912