Table 2 Results from ablation study—cytoplasm
From: MSLP: mRNA subcellular localization predictor based on machine learning techniques
Cytoplasm (5310) | Metric | GNB | DT | RF | XGB | CatB | SVC |
|---|---|---|---|---|---|---|---|
Kmer | Sen | 56.70 | 70.50 | 82.20 | 84.00 | 84.20 | 85.40 |
Spe | 72.90 | 72.40 | 82.50 | 81.70 | 80.80 | 79.20 | |
ACC | 64.80 | 71.50 | 82.30 | 82.90 | 82.50 | 82.30 | |
Pre | 72.90 | 72.40 | 82.50 | 81.70 | 80.80 | 79.20 | |
F1 | 64.60 | 71.50 | 82.30 | 82.90 | 82.50 | 82.30 | |
MCC | 0.3 | 0.429 | 0.647 | 0.657 | 0.65 | 0.647 | |
PseKNC | Sen | 55.00 | 73.70 | 82.10 | 84.30 | 84.50 | 85.20 |
Spe | 73.90 | 73.10 | 82.50 | 80.30 | 80.90 | 79.00 | |
ACC | 64.50 | 73.40 | 82.30 | 82.30 | 82.70 | 82.10 | |
Pre | 73.90 | 73.10 | 82.50 | 80.30 | 80.90 | 79.00 | |
F1 | 64.10 | 73.40 | 82.30 | 82.30 | 82.70 | 82.10 | |
MCC | 0.294 | 0.468 | 0.646 | 0.646 | 0.654 | 0.643 | |
Physiochemical | Sen | 53.80 | 68.90 | 81.10 | 80.40 | 81.50 | 79.90 |
Spe | 74.50 | 69.50 | 79.00 | 77.60 | 75.40 | 68.70 | |
ACC | 64.10 | 69.20 | 80.00 | 79.00 | 78.50 | 74.30 | |
Pre | 74.50 | 69.50 | 79.00 | 77.60 | 75.40 | 68.70 | |
F1 | 63.70 | 69.20 | 80.00 | 79.00 | 78.50 | 74.30 | |
MCC | 0.289 | 0.384 | 0.601 | 0.58 | 0.571 | 0.49 | |
Z-curve | Sen | 56.40 | 67.50 | 78.80 | 80.30 | 79.50 | 81.60 |
Spe | 73.20 | 69.30 | 76.80 | 75.40 | 72.60 | 70.40 | |
ACC | 64.80 | 68.40 | 77.80 | 77.90 | 76.00 | 76.00 | |
Pre | 73.20 | 69.30 | 76.80 | 75.40 | 72.60 | 70.40 | |
F1 | 64.50 | 68.40 | 77.80 | 77.90 | 76.00 | 76.00 | |
MCC | 0.3 | 0.368 | 0.557 | 0.558 | 0.522 | 0.524 | |
All features | Sen | 55.30 | 71.10 | 83.00 | 83.50 | 84.40 | 64.70 |
Spe | 73.80 | 72.20 | 80.60 | 78.00 | 78.70 | 69.40 | |
ACC | 64.50 | 71.70 | 81.80 | 80.70 | 81.50 | 67.00 | |
Pre | 73.80 | 72.20 | 80.60 | 78.00 | 78.70 | 69.40 | |
F1 | 64.20 | 71.70 | 81.80 | 80.70 | 81.50 | 67.00 | |
MCC | 0.296 | 0.433 | 0.636 | 0.616 | 0.632 | 0.341 |