MSLP: mRNA subcellular localization predictor based on machine learning techniques

BMC Bioinformatics

Table 5 Results from ablation study for ExR

ExR (710)	Metric	GNB	DT	RF	XGB	CatB	SVC
Kmer	Sen	52.80	49.30	71.80	69.70	74.60	73.20
	Spe	76.10	60.60	69.00	71.10	69.00	66.90
	ACC	64.40	54.90	70.40	70.40	71.80	70.10
	Pre	76.10	60.60	69.00	71.10	69.00	66.90
	F1	63.90	54.80	70.40	70.40	71.80	70.00
	MCC	0.297	0.099	0.409	0.408	0.437	0.402
PseKNC	Sen	54.20	55.60	73.20	72.50	70.40	73.20
	Spe	74.60	64.10	73.20	73.20	69.70	67.60
	ACC	64.40	59.90	73.20	72.90	70.10	70.40
	Pre	74.60	64.10	73.20	73.20	69.70	67.60
	F1	64.10	59.80	73.20	72.90	70.10	70.40
	MCC	0.295	0.198	0.465	0.458	0.401	0.409
Physiochemical	Sen	69.70	64.10	71.10	69.70	77.50	78.20
	Spe	49.30	60.60	63.40	65.50	65.50	58.50
	ACC	59.50	62.30	67.30	67.60	71.50	68.30
	Pre	49.30	60.60	63.40	65.50	65.50	58.50
	F1	59.10	62.30	67.20	67.60	71.40	68.00
	MCC	0.194	0.247	0.346	0.352	0.433	0.374
Z-curve	Sen	52.10	52.80	66.90	74.60	78.20	76.10
	Spe	68.30	52.80	60.60	64.10	66.20	62.70
	ACC	60.20	52.80	63.70	69.40	72.20	69.40
	Pre	68.30	52.80	60.60	64.10	66.20	62.70
	F1	59.90	52.80	63.70	69.30	72.10	69.20
	MCC	0.207	0.056	0.275	0.39	0.447	0.391
All features	Sen	68.30	58.50	78.90	73.20	75.40	76.10
	Spe	62.70	63.40	62.70	70.40	69.00	40.80
	ACC	65.50	60.90	70.80	71.80	72.20	58.50
	Pre	62.70	63.40	62.70	70.40	69.00	40.80
	F1	65.50	60.90	70.60	71.80	72.20	57.10
	MCC	0.31	0.219	0.421	0.437	0.445	0.181

ISSN: 1471-2105