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Fig. 3 | BMC Bioinformatics

Fig. 3

From: REDfold: accurate RNA secondary structure prediction using residual encoder-decoder network

Fig. 3

The illustration of the predicted secondary structures of 16 S_rRNA AY738738, which were drawn using VARNA [40]. The sequence length is 148 bases and the base pairs are connected with blue lines. a Native RNA secondary structure of 16 S rRNA AY378378. b RNAstructure (ACC=0.61, SEN=0.64, PPV=0.66). c RNAfold (ACC=0.69, SEN=0.71, PPV=0.73). d REDfold (ACC=0.92, SEN=0.91, PPV=0.95). e Probknot (ACC=0.59, SEN=0.67, PPV=0.64). f CONTRAfold (ACC=0.27, SEN=0.31, PPV=0.34). g SPOTRNA (ACC=0.58, SEN=0.33, PPV=0.82). h Ufold (ACC=0.54, SEN=0.24, PPV=0.83). i MXfold2 (ACC=0.65, SEN=0.67, PPV=0.70). j E2Efold (ACC=0.35, SEN=0.07, PPV=0.25)

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