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Table 1 List of RNA structure prediction algorithms that were considered in this work for performance comparison

From: REDfold: accurate RNA secondary structure prediction using residual encoder-decoder network

Program

Version/Package

Reference

RNAfold

Vienna 2.5

[13]

RNAstructure

RNAstructure 6.3

[14]

Probknot

RNAstructure 6.3

[36]

CONTRAfold

CONTRAfold 2.0.2

[37]

SPOTRNA

SPOTRNA (commit No. 6fb1c92)

[17]

Ufold

Ufold 1.2.0

[18]

E2Efold

E2Efold (commit No. f5d0aa7)

[27]

MXfold2

MXfold2 0.1.1

[38]