Table 2 Performance of detection methods on datasets HG002 CLR and HG002 CCS
Coverage | Metric (%) | Sniffles | PBSV | SVIM | cuteSV | cnnLSV |
|---|---|---|---|---|---|---|
HG002 CLR | ||||||
69 \(\times\) | Pre | 94.364 | 94.825 | 94.981 | 95.233 | 95.976 |
Rec | 89.265 | 87.574 | 91.899 | 91.547 | 93.403 | |
F1 | 91.744 | 91.055 | 93.415 | 93.354 | 94.672 | |
40 \(\times\) | Pre | 93.127 | 94.782 | 95.343 | 95.253 | 95.512 |
Rec | 90.177 | 86.423 | 88.352 | 90.966 | 91.754 | |
F1 | 91.628 | 90.410 | 91.715 | 93.060 | 93.595 | |
30 \(\times\) | Pre | 91.710 | 95.001 | 96.277 | 94.941 | 95.143 |
Rec | 88.684 | 84.016 | 82.211 | 88.528 | 89.410 | |
F1 | 90.171 | 89.172 | 88.690 | 91.623 | 92.187 | |
20 \(\times\) | Pre | 92.845 | 95.427 | 85.530 | 96.193 | 92.835 |
Rec | 77.316 | 76.921 | 90.374 | 77.471 | 88.248 | |
F1 | 84.372 | 85.181 | 87.886 | 85.823 | 90.483 | |
10 \(\times\) | Pre | 90.322 | 96.888 | 91.837 | 96.365 | 92.161 |
Rec | 57.629 | 49.590 | 73.685 | 57.380 | 73.654 | |
F1 | 70.363 | 65.603 | 81.766 | 71.930 | 81.875 | |
HG002 CCS | ||||||
28 \(\times\) | Pre | 94.059 | 93.622 | 93.312 | 94.964 | 94.858 |
Rec | 93.777 | 84.172 | 92.770 | 93.393 | 93.673 | |
F1 | 93.918 | 88.646 | 93.040 | 94.172 | 94.261 | |
10 \(\times\) | Pre | 94.092 | 95.468 | 92.192 | 94.937 | 93.748 |
Rec | 88.373 | 75.532 | 90.343 | 87.014 | 90.872 | |
F1 | 91.143 | 84.338 | 91.258 | 90.803 | 92.288 | |