meth-SemiCancer: a cancer subtype classification framework via semi-supervised learning utilizing DNA methylation profiles

Table 5 Average BRCA subtype classification performance results under different confidence thresholds for pseudo-labeling based on Tenfold cross-validation

Confidence threshold	0.5	0.6	0.7	0.8	0.9
Accuracy	0.836	0.839	0.842	0.844	0.842
F1-score	0.821	0.826	0.828	0.834	0.831
MCC	0.747	0.743	0.753	0.751	0.745
Recall	0.729	0.719	0.719	0.729	0.694
Precision	0.793	0.782	0.794	0.798	0.768
Kappa	0.742	0.737	0.746	0.742	0.735

ISSN: 1471-2105