Table 10 Comparison of position encodings with Proteinnet DSSP8 dataset
From: AttSec: protein secondary structure prediction by capturing local patterns from attention map
Position encoding | TEST2018 | SPOT-2016 | SPOT-2016-HQ | SPOT-2018 | SPOT-2018-HQ |
|---|---|---|---|---|---|
RPE (this work) | 77.4 | 70.5 | 73.0 | 71.4 | 72.4 |
No | 77.1 | 70.4 | 72.5 | 71.3 | 71.8 |
APE | 75.8 | 69.4 | 71.4 | 70.1 | 70.7 |
RPE + APE | 74.6 | 68.8 | 70.7 | 69.4 | 69.8 |