Table 11 Comparison of structures with Proteinnet DSSP8 dataset
From: AttSec: protein secondary structure prediction by capturing local patterns from attention map
Methods | TEST2018 | SPOT-2016 | SPOT-2016-HQ | SPOT-2018 | SPOT-2018-HQ |
|---|---|---|---|---|---|
AttSec(this work) | 77.4 | 70.5 | 73.0 | 71.4 | 72.4 |
Transformer only | 76.9 | 70.2 | 72.4 | 71.1 | 71.8 |
LM’s attention | 75.3 | 68.7 | 70.7 | 69.4 | 70.1 |