Fig. 1

Interoperability scheme of implemented functionality on CAGECAT. Blue outlined rectangles indicate entry points. Arrows indicate available downstream analyses from a module. Currently, a cblaster search/recompute job can be used for every downstream module, excluding a recompute job from being recomputed again. The clinker tool has no downstream analyses. For example, a possible workflow could be: cblaster search to cblaster recompute to cblaster plot clusters to selective clinker visualisation. This allows for fine-grained control of relevant matches for final visualisation and greatly improves user processing time