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Table 5 The number of SNPs identified by each method for each case study

From: BGWAS: Bayesian variable selection in linear mixed models with nonlocal priors for genome-wide association studies

Method

Salt stress

Age first drink

\(\alpha\) = 0.05

\(\alpha\) = 0.1

\(\alpha\) = 0.05

\(\alpha\) = 0.1

SMA-Approx.

22

25

8

8

SMA-Exact

22

26

8

8

NP, \(\tau = 0.348\)

4

4

1

2

NP, \(\tau = 0.022\)

5

8

3

4

NP, \(\tau\) estimated

7

7

4

6

  1. Multiple comparison corrections are based on the number of SNPs in a given genotype dataset