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Fig. 3 | BMC Bioinformatics

Fig. 3

From: geneHapR: an R package for gene haplotypic statistics and visualization

Fig. 3

Visualization of haplotype classification, genomic variants and evolutionary network. A Haplotype classifications of OsGHD7, each line represent a haplotype and colored columns represents loci and frequency in the last column. B Visualization of variants position above gene model, the black line represents genome and rectangles represent exon. Flags represent variants and the coordinate with alleles in parenthesis were displayed above gene model. Two or more transcripts will be displayed in different colors. C Example of OsGHD7 haplotype network. Each circle represents a haplotype and the size indicates accession number. The pies in different color represent the ratio of category in each haplotype. The symbols on line between haplotypes represent number of variants

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