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Table 3 Pathway enrichment of gene sets under different models (OVCA dataset)

From: Identifying driver pathways based on a parameter-free model and a partheno-genetic algorithm

K

MWSM

\(r_{pe}(\%)\)

2

MYC CCNE1

100.0

3

MYC CCNE1 NINJ2

66.7

4

MYC CCNE1 NINJ2 ABCC10

50.0

5

MYC CCNE1 COL5A3 NINJ2 ABCC10

40.0

6

MYC CCNE1 COL5A3 NINJ2 MYH4 ABCC10

33.3

7

MYC CCNE1 COL5A3 NINJ2 MYH4 ABCC10 TRAPPC8

28.6

8

MYC CCNE1 COL5A3 NINJ2 MYH4 ABCC10 TRAPPC8 PRPC7

25.0

K

SMCM

\(r_{pe}(\%)\)

2

MYC CCNE1

100.0

3

MYC CCNE1 KRAS

100.0

4

MYC CCNE1 NINJ2 MACF1

50.0

5

MYC CCNE1 NINJ2 MACF1 NF1

40.0

6

MYC CCNE1 NINJ2 MACF1 NF1 ARFRP1

33.3

7

MYC CCNE1 NINJ2 MACF1 NF1 MBD3 ZNF512B

28.6

8

MYC CCNE1 PPP2R2A NINJ2 MACF1 NOTCH3 TPD52L2 RYR2

37.5

K

SMCMN

\(r_{pe}(\%)\)

2

MYC CCNE1

100.0

3

MYC KRAS CCNE1

100.0

4

MYC KRAS CCNE1 FBXW7

75.0

5

MYC KRAS CDH1 CTNNB1 CCNE1

80.0

6

MYC KRAS CDH1 CTNNB1 CCNE1 NOTCH3

66.7

7

MYC KRAS CDH1 CTNNB1 CCNE1 NOTCH3 FZD2

57.1

8

MYC KRAS CCNE1 PTEN NRAS NF1 BRAF NOTCH3

62.5

  1. Bold indicate that the genes are enriched in the same biological signaling pathway