Table 6 Comparisons of experimental results on the ovarian carcinoma dataset
From: Identifying driver pathways based on a parameter-free model and a partheno-genetic algorithm
K | Dendrix | Time(s) | \(r_{pe}(\%)\) |
|---|---|---|---|
2 | MYC CCNE1 | 364.3 | 100.0 |
3 | MYC CCNE1 NINJ2 | 299.3 | 66.7 |
4 | MYC CCNE1 ABCC10 NINJ2 | 300.4 | 50.0 |
5 | MYC CCNE1 COL5A3 ABCC10 NINJ2 | 268.5 | 60.0 |
6 | MYC CCNE1 COL5A3 ABCC10 NINJ2 MYH4 | 282.8 | 50.0 |
7 | MYC CCNE1 COL5A3 ABCC10 NINJ2 KIAA1012 MYH4 | 261.9 | 42.9 |
8 | MYC CCNE1 COL5A3 ABCC10 NINJ2 KIAA1012 MYH4 PEG3 | 269.4 | 37.5 |
K | GA | Time(s) | \(r_{pe}(\%)\) |
|---|---|---|---|
2 | MYC CCNE1 | 8.2 | 100.0 |
3 | MYC CCNE1 NINJ2 | 10.3 | 66.7 |
4 | MYC CCNE1 MYH4 NINJ2 | 12.2 | 50.0 |
5 | MYC CCNE1 COL5A3 ABCC10 NINJ2 | 15.5 | 60.0 |
6 | MYC CCNE1 COL5A3 ABCC10 NINJ2 MYH4 | 16.2 | 50.0 |
7 | MYC CCNE1 COL5A3 ABCC10 NINJ2 PEG3 MYH4 | 18.6 | 42.9 |
8 | MYC CCNE1 COL5A3 ABCC10 NINJ2 PEG3 MYH4 KIAA1012 | 21.3 | 37.5 |
K | iMCMC | Time(s) | \(r_{pe}(\%)\) |
|---|---|---|---|
2 | KRAS PPP2R2A | – | – |
3 | MYC CCNE1 RAD52 | – | – |
K | PGA-MWS | Time(s) | \(r_{pe}(\%)\) |
|---|---|---|---|
2 | MYC CCNE1 | 45.0 | 100.0 |
3 | MYC CCNE1 NINJ2 | 137.0 | 66.7 |
4 | MYC CCNE1 MACF1 NINJ2 | 235.0 | 50.0 |
5 | MYC CCNE1 MACF1 NINJ2 BRD4 | 722.0 | 40.0 |
6 | MYC CCNE1 MACF1 NINJ2 BRD4 RYR2 | 813.0 | 33.3 |
7 | MYC CCNE1 MACF1 NINJ2 BRD4 KIF26B ZDHHC11 | 1145.0 | 28.6 |
8 | MYC CCNE1 MACF1 NINJ2 BRD4 KIF26B ZDHHC11 USH2A | 741.0 | 25.0 |
K | CGA-MWS | Time(s) | \(r_{pe}(\%)\) |
|---|---|---|---|
2 | MYC CCNE1 | 4.5 | 100.0 |
3 | MYC CCNE1 NINJ2 | 5.2 | 66.7 |
4 | MYC CCNE1 MACF1 NINJ2 | 5.5 | 50.0 |
5 | MYC CCNE1 MACF1 NINJ2 NF1 | 7.0 | 40.0 |
6 | MYC CCNE1 MACF1 NINJ2 BRD4 LRP2 | 8.2 | 33.3 |
7 | MYC CCNE1 MACF1 NINJ2 BRD4 ZDHHC11 LRP2 | 9.5 | 28.6 |
8 | MYC CCNE1 MACF1 NINJ2 BRD4 USH2A KIF26B TBP | 10.3 | 25.0 |
K | CPGA | Time(s) | \(r_{pe}(\%)\) |
|---|---|---|---|
2 | MYC CCNE1 | 257.9 | 100.0 |
3 | MYC CCNE1 KRAS | 416.4 | 100.0 |
4 | MYC CCNE1 KRAS TERT | 626.8 | 75.0 |
5 | MYC CCNE1 KRAS STK11 NF1 | 1206.4 | 80.0 |
6 | MYC CCNE1 KRAS STK11 PIK3CA NF1 | 756.6 | 83.3 |
7 | MYC CCNE1 KRAS STK11 PIK3CA PTEN NF1 | 1167.8 | 85.7 |
8 | MYC CCNE1 KRAS STK11 PIK3CA PTEN CDH1 TERT | 1208.4 | 75.0 |
K | CPGA-SMCMN | Time(s) | \(r_{pe}(\%)\) |
|---|---|---|---|
2 | MYC KRAS | 529.8 | 100.0 |
3 | MYC CCNE1 KRAS | 762.8 | 100.0 |
4 | MYC CCNE1 KRAS PIK3CA | 1383.6 | 100.0 |
5 | MYC CCNE1 KRAS PIK3CA PTEN | 1645.0 | 100.0 |
6 | MYC CCNE1 KRAS PIK3CA PTEN STK11 | 867.4 | 100.0 |
7 | MYC CCNE1 KRAS PIK3CA PTEN STK11 CTNNB1 | 2544.8 | 85.7 |
8 | MYC CCNE1 KRAS PIK3CA PTEN STK11 CTNNB1 TERT | 1429.7 | 75.0 |