Table 1 Comparison of GraphSNP’s main features to the existing visualisation tools
GraphSNP main features | GraphSNP v1 | CATHAI* [11] | Phyloviz online* [10] | Phyloviz 2* [9] |
|---|---|---|---|---|
Doesn’t requires installation | ☑ | ☑ | ||
Support SNP alignment input | ☑ | ☑ | ☑ | |
Support distance matrix input | ☑ | ☑ | ||
Support metadata input | ☑ | ☑ | ☑ | ☑ |
Visualise pairwise distance graph | ☑ | ☑ | ☑ | ☑ |
Apply threshold to split graph and visualise connected components | ☑ | ☑ | ☑ | ☑ |
Detect cluster and report the membership | ☑ | ☑ | ||
Visualise interactive charts for SNP distance distribution and statistics | ☑ | |||
Construct and visualise interactive threshold-based cluster MST | ☑ | |||
Construct and visualise interactive transmission tree | ☑ |