Volume 13 Supplement 12

UT-ORNL-KBRIN Bioinformatics Summit 2012

Meeting abstracts

Edited by Eric C Rouchka, Robert M Flight and Hunter NB Moseley

Funding for the UT-ORNL-KBRIN Summit is provided in part by the University of Memphis Office of the Provost, Memphis Research Consortium, Kentucky Biomedical Research Infrastructure Network (KBRIN), University of Tennessee Center for Integrative and Translational Genomics, University of Tennessee Molecular Resource Center, UT-ORNL Science Alliance, and NIH grant P20RR16481.

11th Annual UT-ORNL-KBRIN Bioinformatics Summit 2012. Go to conference site.

Louisville, KY, USA30 March - 1 April 2012

Concatenated PDF 13S12

Proceedings of the Eleventh Annual UT-ORNL-KBRIN Bioinformatics Summit 2012

Authors: Eric C Rouchka, Robert M Flight and Hunter NB Moseley

Citation: BMC Bioinformatics 2012 13(Suppl 12):A1

Content type: Meeting abstract Published on: 31 July 2012
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Comprehensive characterization of an individual’s LINE-1 insertion profile using next generation sequencing data

Authors: Alexander Kemper, Musa Hindi, Kenneth S Ramos and Theodore S Kalbfleisch

Citation: BMC Bioinformatics 2012 13(Suppl 12):A2

Content type: Meeting abstract Published on: 31 July 2012
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Regulation of cell proliferation and apoptosis by growth hormone during zebrafish auditory hair cell regeneration

Authors: Gopinath Rajadinakaran, Huifang Sun, Claire Rinehart, Eric Rouchka and Michael Smith

Citation: BMC Bioinformatics 2012 13(Suppl 12):A3

Content type: Meeting abstract Published on: 31 July 2012
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RNASeq profiling of UTR expression during neuronal plasticity

Authors: Benjamin J Harrison, Robert M Flight, Abdallah Eteleeb, Eric C Rouchka and Jeffrey C Petruska

Citation: BMC Bioinformatics 2012 13(Suppl 12):A4

Content type: Meeting abstract Published on: 31 July 2012
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The influence of sample biases on estimations of marine microbial diversity

Authors: Caroline Rempe, Charles R Budinoff, T Chad Effler and Alison Buchan

Citation: BMC Bioinformatics 2012 13(Suppl 12):A5

Content type: Meeting abstract Published on: 31 July 2012
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Meta-analysis of genes within QTLs of group A streptococcal sepsis and their expression QTLs reveal pathways modulating host differential response to streptococcal sepsis

Authors: Nourtan Abdeltawab, Lu Lu, Robert Williams and Malak Kotb

Citation: BMC Bioinformatics 2012 13(Suppl 12):A6

Content type: Meeting abstract Published on: 31 July 2012
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QTLs for bone mineral density of femurs and tibias in recombinant inbred strains derived from C57BL/6J and DBA/2J inbred strains

Authors: Lishi Wang, Wenli Lu, Rachel Scheib, Yue Huang, XiaoYun Liu, Linda Myers, Lu Lu, Robert W Williams, Yan Jiao and Weikuan Gu

Citation: BMC Bioinformatics 2012 13(Suppl 12):A7

Content type: Meeting abstract Published on: 31 July 2012
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Identification of hearing loss relevant genes in QTL on mouse chromosome 16

Authors: Fusheng Zhao, Yonghui Ma, Yan Jiao, Lishi Wang, Yue Huang, Wei Wei and Weikuan Gu

Citation: BMC Bioinformatics 2012 13(Suppl 12):A8

Content type: Meeting abstract Published on: 31 July 2012
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Building better interdisciplinary scientists: creating graduate level courses to address the communication gap in interdisciplinary research

Authors: Denise R Koessler, Elizabeth G Johnson, Jordan M Utley, Harry A Richards and Cynthia B Peterson

Citation: BMC Bioinformatics 2012 13(Suppl 12):A9

Content type: Meeting abstract Published on: 31 July 2012
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Identifying indispensable proteins of the type III secretion systems of Salmonella enterica serovar Typhimurium strain LT2

Authors: Chandrajit Lahiri, Pawar Shrikant, Radhakrishnan Sabarinathan, M Izhar Ashraf and Dipshikha Chakravortty

Citation: BMC Bioinformatics 2012 13(Suppl 12):A10

Content type: Meeting abstract Published on: 31 July 2012
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Evaluation of gene expression in muscle in mouse model lacking of vitamin C synthesis

Authors: Yonghui Ma, Yan Jiao, Fusheng Zhao and Weikuan Gu

Citation: BMC Bioinformatics 2012 13(Suppl 12):A11

Content type: Meeting abstract Published on: 31 July 2012
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Finding long protein products of alternatively spliced genes

Authors: Neil Moore, Jerzy W Jaromczyk and Christopher L Schardl

Citation: BMC Bioinformatics 2012 13(Suppl 12):A12

Content type: Meeting abstract Published on: 31 July 2012
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System dynamics modeling of childhood obesity

Authors: Behrouz Madahian, Robert C Klesges, Lisa Klesges and Ramin Homayouni

Citation: BMC Bioinformatics 2012 13(Suppl 12):A13

Content type: Meeting abstract Published on: 31 July 2012
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The development of a three-frame timeline for clinical concepts extracted from discharge summaries

Authors: Christopher Burton and Sujin Kim

Citation: BMC Bioinformatics 2012 13(Suppl 12):A14

Content type: Meeting abstract Published on: 31 July 2012
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Research Electronic Data Capture (REDCap) - planning, collecting and managing data for clinical and translational research

Authors: Paul A Harris

Citation: BMC Bioinformatics 2012 13(Suppl 12):A15

Content type: Meeting abstract Published on: 31 July 2012
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Temporal and spatial relationship of gene expression in the infarcted rat heart

Authors: Wenyuan Zhao, Tieqian Zhao, Yuanjian Chen and Yao Sun

Citation: BMC Bioinformatics 2012 13(Suppl 12):A16

Content type: Meeting abstract Published on: 31 July 2012
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Evaluation of potential role of Atp5g3 in modulating alcohol preference and obesity

Authors: Yue Huang, Lishi Wang, Robert W Willliams, Weikuan Gu and Yan Jiao

Citation: BMC Bioinformatics 2012 13(Suppl 12):A17

Content type: Meeting abstract Published on: 31 July 2012
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Evaluation of potential role of vitamin C in differential skeletal development between female and male mice using a mouse model

Authors: Yan Jiao, Yonghui Ma, Xiaoyun Liu and Weikuan Gu

Citation: BMC Bioinformatics 2012 13(Suppl 12):A18

Content type: Meeting abstract Published on: 31 July 2012
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The effects of early-life risperidone administration on forebrain neurotrophin expression during adulthood

Authors: Matt Gannon, Rachel Stevens, Molly Griffith and Mark Bardgett

Citation: BMC Bioinformatics 2012 13(Suppl 12):A19

Content type: Meeting abstract Published on: 31 July 2012
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The antibiotic resistance proteome of Acinetobacter baumanii MDR isolate MMC#4

Authors: Dana Marshall, Jianan Dong, Leon Dent and Siddharth Pratap

Citation: BMC Bioinformatics 2012 13(Suppl 12):A20

Content type: Meeting abstract Published on: 31 July 2012
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Experimental and computational analysis of mouse sleep-wake dynamics

Authors: Farid Yaghouby, Ting Zhang, Martin Striz, James Crawford, Kevin Donohue, Bruce O’Hara and Sridhar Sunderam

Citation: BMC Bioinformatics 2012 13(Suppl 12):A21

Content type: Meeting abstract Published on: 31 July 2012
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Computational investigation of DNA packing in confinement

Authors: Uta Ziegler, Yuanan Diao, Claus Ernst and Anthony Montemayor

Citation: BMC Bioinformatics 2012 13(Suppl 12):A22

Content type: Meeting abstract Published on: 31 July 2012
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DNA as a medium for hiding data

Authors: Marc Beck and Roman Yampolskiy

Citation: BMC Bioinformatics 2012 13(Suppl 12):A23

Content type: Meeting abstract Published on: 31 July 2012
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Delivering informatics for clinical research in developing countries

Authors: Jonathan Babbage, Naga S Nagisetty, Steven P Larmore and Jacqueline Fiore

Citation: BMC Bioinformatics 2012 13(Suppl 12):A24

Content type: Meeting abstract Published on: 31 July 2012
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UT-ORNL-KBRIN Bioinformatics Summit 2012

Meeting abstracts

Proceedings of the Eleventh Annual UT-ORNL-KBRIN Bioinformatics Summit 2012

Comprehensive characterization of an individual’s LINE-1 insertion profile using next generation sequencing data

Regulation of cell proliferation and apoptosis by growth hormone during zebrafish auditory hair cell regeneration

RNASeq profiling of UTR expression during neuronal plasticity

The influence of sample biases on estimations of marine microbial diversity

Meta-analysis of genes within QTLs of group A streptococcal sepsis and their expression QTLs reveal pathways modulating host differential response to streptococcal sepsis

QTLs for bone mineral density of femurs and tibias in recombinant inbred strains derived from C57BL/6J and DBA/2J inbred strains

Identification of hearing loss relevant genes in QTL on mouse chromosome 16

Building better interdisciplinary scientists: creating graduate level courses to address the communication gap in interdisciplinary research

Identifying indispensable proteins of the type III secretion systems of Salmonella enterica serovar Typhimurium strain LT2

Evaluation of gene expression in muscle in mouse model lacking of vitamin C synthesis

Finding long protein products of alternatively spliced genes

System dynamics modeling of childhood obesity

The development of a three-frame timeline for clinical concepts extracted from discharge summaries

Research Electronic Data Capture (REDCap) - planning, collecting and managing data for clinical and translational research

Temporal and spatial relationship of gene expression in the infarcted rat heart

Evaluation of potential role of Atp5g3 in modulating alcohol preference and obesity

Evaluation of potential role of vitamin C in differential skeletal development between female and male mice using a mouse model

The effects of early-life risperidone administration on forebrain neurotrophin expression during adulthood

The antibiotic resistance proteome of Acinetobacter baumanii MDR isolate MMC#4

Experimental and computational analysis of mouse sleep-wake dynamics

Computational investigation of DNA packing in confinement

DNA as a medium for hiding data

Delivering informatics for clinical research in developing countries

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