Edited by Byung-Jun Yoon, Xiaoning Qian, Tamer Kahveci, and Ranadip Pal
Volume 20 Supplement 12
Selected original research articles from the Fifth International Workshop on Computational Network Biology: Modeling, Analysis and Control (CNB-MAC 2018): bioinformatics
Research
Publication of this supplement has not been supported by sponsorship. Information about the source of funding for publication charges can be found in the individual articles. The articles have undergone the journal's standard peer review process for supplements. The Supplement Editors declare that they have no competing interests.
Washington, D.C., USA29 August 2018
Related articles have been published as a supplement to BMC Genomics.
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Citation: BMC Bioinformatics 2019 20(Suppl 12):316
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Recursive model for dose-time responses in pharmacological studies
Clinical studies often track dose-response curves of subjects over time. One can easily model the dose-response curve at each time point with Hill equation, but such a model fails to capture the temporal evolu...
Citation: BMC Bioinformatics 2019 20(Suppl 12):317 -
Optimal clustering with missing values
Missing values frequently arise in modern biomedical studies due to various reasons, including missing tests or complex profiling technologies for different omics measurements. Missing values can complicate th...
Citation: BMC Bioinformatics 2019 20(Suppl 12):321 -
MetaNN: accurate classification of host phenotypes from metagenomic data using neural networks
Microbiome profiles in the human body and environment niches have become publicly available due to recent advances in high-throughput sequencing technologies. Indeed, recent studies have already identified dif...
Citation: BMC Bioinformatics 2019 20(Suppl 12):314 -
Network-based prediction of polygenic disease genes involved in cell motility
Schizophrenia and autism are examples of polygenic diseases caused by a multitude of genetic variants, many of which are still poorly understood. Recently, both diseases have been associated with disrupted neu...
Citation: BMC Bioinformatics 2019 20(Suppl 12):313 -
Cross-population analysis for functional characterization of type II diabetes variants
As Genome-Wide Association Studies (GWAS) have been increasingly used with data from various populations, it has been observed that data from different populations reveal different sets of Single Nucleotide Po...
Citation: BMC Bioinformatics 2019 20(Suppl 12):320 -
Analysis and remedy of negativity problem in hybrid stochastic simulation algorithm and its application
The hybrid stochastic simulation algorithm, proposed by Haseltine and Rawlings (HR), is a combination of differential equations for traditional deterministic models and Gillespie’s algorithm (SSA) for stochast...
Citation: BMC Bioinformatics 2019 20(Suppl 12):315 -
A linear delay algorithm for enumerating all connected induced subgraphs
Real biological and social data is increasingly being represented as graphs. Pattern-mining-based graph learning and analysis techniques report meaningful biological subnetworks that elucidate important intera...
Citation: BMC Bioinformatics 2019 20(Suppl 12):319 -
Characterizing building blocks of resource constrained biological networks
Identification of motifs–recurrent and statistically significant patterns–in biological networks is the key to understand the design principles, and to infer governing mechanisms of biological systems. This, h...
Citation: BMC Bioinformatics 2019 20(Suppl 12):318 -
A stochastic model of size control in the budding yeast cell cycle
Cell size is a key characteristic that significantly affects many aspects of cellular physiology. There are specific control mechanisms during cell cycle that maintain the cell size within a range from generat...
Citation: BMC Bioinformatics 2019 20(Suppl 12):322
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