%PDF-1.3
%
1 0 obj
<>
endobj
2 0 obj
<>stream
Acrobat Distiller 10.0.0 (Windows); modified using iText® 5.3.5 ©2000-2012 1T3XT BVBA (AGPL-version)
application/pdf
10.1186/s12859-019-3223-5
BMC Bioinformatics
BMC Bioinformatics, 2019, doi:10.1186/s12859-019-3223-5
Hierarchical Clustering of Maximum Parsimony Reconcilations
Ran Libeskind-Hadas
2019-11-27T17:36:31+01:00
2019-11-27T17:36:31+01:00
2019-11-20T14:55:37+08:00
LaTeX with hyperref package
uuid:97db09d1-e730-4b69-a922-2d68179b58f4
uuid:b7ae2806-6552-40bd-be42-f59a881d6a1f
default
1
converted
uuid:97db09d1-e730-4b69-a922-2d68179b58f4
converted to PDF/A-2b
pdfToolbox
2019-11-21T13:55:11+08:00
2
B
Springer Nature ORCID Schema
http://springernature.com/ns/xmpExtensions/2.0/
sn
authorInfo
Bag AuthorInformation
external
Author information: contains the name of each author and his/her ORCID (ORCiD: Open Researcher and Contributor ID). An ORCID is a persistent identifier (a non-proprietary alphanumeric code) to uniquely identify scientific and other academic authors.
editorInfo
Bag EditorInformation
external
Editor information: contains the name of each editor and his/her ORCID identifier.
seriesEditorInfo
Bag SeriesEditorInformation
external
Series editor information: contains the name of each series editor and his/her ORCID identifier.
AuthorInformation
http://springernature.com/ns/xmpExtensions/2.0/authorInfo/
author
Specifies the types of author information: name and ORCID of an author.
name
Text
Gives the name of an author.
orcid
URI
Gives the ORCID of an author.
EditorInformation
http://springernature.com/ns/xmpExtensions/2.0/editorInfo/
editor
Specifies the types of editor information: name and ORCID of an editor.
name
Text
Gives the name of an editor.
orcid
URI
Gives the ORCID of an editor.
SeriesEditorInformation
http://springernature.com/ns/xmpExtensions/2.0/seriesEditorInfo/
seriesEditor
Specifies the types of series editor information: name and ORCID of a series editor.
name
Text
Gives the name of a series editor.
orcid
URI
Gives the ORCID of a series editor.
http://ns.adobe.com/pdf/1.3/
pdf
Adobe PDF Schema
internal
A name object indicating whether the document has been modified to include trapping information
Trapped
Text
http://ns.adobe.com/xap/1.0/mm/
xmpMM
XMP Media Management Schema
internal
UUID based identifier for specific incarnation of a document
InstanceID
URI
internal
The common identifier for all versions and renditions of a document.
OriginalDocumentID
URI
internal
A reference to the original document from which this one is derived. It is a minimal reference; missing components can be assumed to be unchanged. For example, a new version might only need to specify the instance ID and version number of the previous version, or a rendition might only need to specify the instance ID and rendition class of the original.
DerivedFrom
ResourceRef
Identifies a portion of a document. This can be a position at which the document has been changed since the most recent event history (stEvt:changed). For a resource within an xmpMM:Ingredients list, the ResourceRef uses this type to identify both the portion of the containing document that refers to the resource, and the portion of the referenced resource that is referenced.
http://ns.adobe.com/xap/1.0/sType/Part#
stPart
Part
http://ns.adobe.com/xap/1.0/t/pg/
xmpTPg
XMP Paged-Text
internal
A structure containing the characteristics of a font used in a document
Fonts
Bag Font
internal
XMP08 Spec: An ordered array of plate names that are needed to print the document (including any in contained documents).
PlateNames
Seq Text
A structure containing the characteristics of a font used in a document.
http://ns.adobe.com/xap/1.0/sType/Font#
stFnt
Font
http://ns.adobe.com/pdfx/1.3/
pdfx
PDF/X ID Schema
internal
ID of PDF/X standard
GTS_PDFXVersion
Text
internal
Conformance level of PDF/X standard
GTS_PDFXConformance
Text
internal
Company creating the PDF
Company
Text
internal
Date when document was last modified
SourceModified
Text
http://www.aiim.org/pdfa/ns/id/
pdfaid
PDF/A ID Schema
internal
Part of PDF/A standard
part
Integer
internal
Amendment of PDF/A standard
amd
Text
internal
Conformance level of PDF/A standard
conformance
Text
endstream
endobj
3 0 obj
<>
endobj
4 0 obj
<>/Subtype/Form/BBox[0 0 11.802 8.41801]/Length 10/Filter/FlateDecode>>stream
H0
endstream
endobj
5 0 obj
<>
endobj
7 0 obj
<>/Subtype/Form/BBox[0 0 6.897 8.41797]/Length 10/Filter/FlateDecode>>stream
H0
endstream
endobj
8 0 obj
<>>>
endobj
10 0 obj
<>/ProcSet[/PDF/Text/ImageB/ImageC/ImageI]/ColorSpace<>/Font<>>>/TrimBox[0 0 595 791]/Thumb 25 0 R/MediaBox[0 0 595 791]/BleedBox[0 0 595 791]/Annots[26 0 R 27 0 R 28 0 R 29 0 R 30 0 R 31 0 R 32 0 R 33 0 R 34 0 R 35 0 R 36 0 R 37 0 R 38 0 R 39 0 R]/Rotate 0>>
endobj
40 0 obj
<>
endobj
41 0 obj
<>/Rect[241.794 74.136 369.66 82.536]/H/I/AP<>>>
endobj
43 0 obj
<>
endobj
44 0 obj
<>/Subtype/Form/BBox[0 0 6.897 8.41803]/Length 10/Filter/FlateDecode>>stream
H0
endstream
endobj
45 0 obj
<>>>
endobj
26 0 obj
<>>>
endobj
13 0 obj
<>
endobj
42 0 obj
<>/Subtype/Form/BBox[0 0 127.866 8.4]/Length 10/Filter/FlateDecode>>stream
H0
endstream
endobj
47 0 obj
<>
endobj
49 0 obj
<>/Subtype/Form/BBox[0 0 6.89697 8.418]/Length 10/Filter/FlateDecode>>stream
H0
endstream
endobj
50 0 obj
<>>>
endobj
27 0 obj
<>>>
endobj
52 0 obj
<>/Rect[182.304 50.259 332.571 58.533]/H/I/AP<>>>
endobj
54 0 obj
<>
endobj
55 0 obj
<>/Subtype/Form/BBox[0 0 6.897 8.418]/Length 10/Filter/FlateDecode>>stream
H0
endstream
endobj
28 0 obj
<>>>
endobj
12 0 obj
<>stream
x}K#7]m%x#fl3-IZl0+Ifԇ;@iYW2p oͷ?^W/Ƿ7D|zY4M>|., Cq:,ϖfagyf??wws<?0 FQZ]u~y_q}Aaچ~!lm" 1.L7n+Ad |۶aa6z?-VX03-~NPQ~ˢ)y{6"P"xcye5`BqP?{ziz;vxLigzlVfr?8-A9.;k Y]l*3cE%0w~ǚzcm9`{)M^-M8ZhMBr~qZ輖yBv/mSs,~Y,^c;;MNtoQ[6O=FJv-m"%sMj)9f(/<8s3{ٻJm^AoݜE;[
LYq1ɗ&&
:'ȈKbw<3sр h`#%*.ya+yp3,}EqqD, uCtHc iof?WzͤG[r_NKsU-/WWtdLE4ۃ[7{@hWܵ>$iZQip-$9-/f%eR?
AgW^n]gՉl}B%!4 0;Lt_kp+do?H~'9= ąr
j1s>'9q.E^3QtZWi18%(G|a+`Rs6m)}M>r8|*6b~qMB3vсk8kFMKgFM[:uH}( &+mىnN9;ӯs_IJ=צ:3&JXHu? SH*'Ͷ.9i+bfU%[ZFI%:=K?32U~ǃ2#3주ZqKCԹqM4Q}c3Q#Nk_nt#>(My@;/",cHљ2>3^`Ix24қ p|u:[јf '0'≩_wQ$- + 5tH%"yXN{鬑 IVu9Z5]#]y8ig.j>M-Ŏ9BnBAĠI7 M_AC#n ͅʸ{'$XRy!^>L-!Y:x:p?w%X Uzv+D&D^7AsB
:,nD/;ˮnBA9}=dIEqk\
ngAAX?\}S.)kJ:!&RrS8Y.+_ :I~Z^A6[:2qBNhB |wsֳ@U&S80@$w%
:탈tUqrӰ|:A );*UJA:)L`@ĺ SA|MDa/n`-
zʒޞ;>cr~dXL5Maa5tH5hmQ6ƷߩF:я>Qas="tQ̔D6+ IըEll5gwF5$75ѩ_c<# M1*#/li6ضѣe]ϭIR'չ8"2QA~$vޓ?f':"xlj;(:]a wnSY#w효l9Ͷ8c$`GunГ`
3HS}#ln=m-^/v}Rvoln6 ^~(Q~#ޒ
'
xzzyJ:e'{}G&kwl%S&# Z$-}Q,= "|[6p uSR3Cہ,5Y_^bI捴5 9~v8toMHHa/{d4>Q{eou1hV C!yV$Zvc*}A^b&-- 5\ADƄH
XM,I |!a+Fi<4dvBn\4YFY5ODzYzPŴndGe5)e朹yf3ɋ
@b0]ԗnqi#B&*4ZF#.lJ*i/_+
Kdbݻn2"݈ibeNdݤ1FiJɾp`DDž Sif9M0^8MYEq7(ˤf.4HkR^$Sa}X9b
9}obvvh5%udMh$Cl~v8'u?"鬇h7'DShJ*'nf`T]vE&F%"a%譜_yvk보]FG~I+DؚJ鲇u}~^Ahؒ3Q%h+lȝyΉ'#Y;ǤLAڵʄѲc
l V&wF<n=*YD?~sc\$m""`qЪ?gaXSBjc;0k]/1Y6 ww6?jA RM7f
6' U=Hϲ
N\0ZJҚ{U!g39W>:=`{wb{*3`_xr>)}.2}bzNq=E-pT<YORSmքZow!
|5;EIGtEt&z][<71N:ךhјAp؇$ GLyWb2
wfy?,E:(+`L"9i0N>c<`Xn% WvGѴ_:s (G؈ۡp5P;mSbI^&I^ ۀ
s(e:TNI8]вç|-^E#kJnWRvӚۯ!]Ƒ2A@ڌpe.B(
gf48Kƛ$XMHZe~`y8*
x٥(QS1Uds};džECx+
eҲ=ꌐFe_r/+ۓb̽P9*.2V2
!:g<3Ҍ2+<}h-y"~Y
3nDݪ.0cZ[a(q> 8N3tVhKQo3KH/5Y
ko!V_$=c{\ˌ澦 9s3-) RDrۚdW}:r 5wAMFDk&!|hZj .mӃ3Ito]A-~_#ۚ-Ħ%ҦS
XtxI
H%pK]Q2`2>@P0;퉾B|k?%MC
q,r%mIJ%l4Ywg&VvKOs\~^A؍Э~7E-aT`QweBHR^٨1fIkgow`I^F@oa,(oAi3HR4w6XmHci X)Φ8te
'oDz@l'Le:^5_ITwq9aexȬv-$Y9MT3$nr d߇U ~4Nu}')ZR&L3?
.HgG;:!i]DULHR"Q+fANRvmR]{kv$ (dN+ǯ.M 0ӎ=,[вB&O;Y;x0<9~{^[!-XlЏGYT?uauvzXC8=ELL3GS>ɺHnM++hUU袌u{LB9ɫ@ˡoP[~"v_Ι'
q;i4E4}f:%6QL~ a`ОnJ6DokxnEk$YK:J: fb&NE'1qB}i+2>G-wzhQ^ΆuDaA2,PK`Z^.ݿ\ˏ9V2Mi~'[~_oOR;9aDSzbr.MȠt=Rjy_{0&yxjim_z?J) >v1W8N刃zTL>Aϫ'oѥ(Q+iIkL-)[Fؾ-P#n,6ǂIXU ~%5~:>,KfLe }.9)+ц93,i=IRL~E2ؠ: ]S3<tg}I2֞%>q[T
Iy$ӉUB=PSDI֥j*)(D7gw蔕.E !aD[eR4;I~7M@ͪL_ mT. %᧟o{YbvG :Xa~c?H,ƐhgI{շoNگz鬴stls*kBWeij.ȉɾa:@
xd4dI{5K;{ŷ۳oO~ʇRwҢeLQEm!ɻ>E?}.r{n(遜ߥBɃ.JVn}sJ{NzD*v @#o'e:GּxUJ?A^wt^?S`Gr(q.d|
TIƈ̌fF@}t3yTќ^LzȽu>ɷ,I,_3deMq0ʮsmұB
~2JLݝzCO.`W>1$ܫp1^;e:<Εc%X0w%zM`ͯ5ŮETFC*kVЊ:%߶mU*ڥ,WXXX&xRv}8Nmu\͢\+BZ2Ip-&p3) 鶳}rbWwj /C)'2:ZwŽOJ^'#u?M1k4f6Wj;:9Ǜ RYmDbc:zn|ǑGb"o/~IG/d F3p
"*m
*cDW#R/[w¨Wn< Q/&a"$>04".BMRG%MM`x}TevڝC/|;FЦ17gO:nM2-r4jqs~ݸm(F/WBu?ѧAϰx:Mc#
=hT|CF1(PuY۲pnW}48u-nKX+FL$VaLw2dBrݑ}cSfOɵ˥:n'~d뿿t&f|INӺ>ܩRM ZOsVz쥣jsL sNJ*|22\ $X:U.r"Ŧ}iC0Ф;cS^ێxO3IB)ʪ۹X2Wb
Dls#$\U9i8 Qן}y"$3RO@TQMC5lJl.W%H8wCf 74ZS*`5E=s {P*aSY ݙr|Ik>H\%2
/nrwؽ!riAnrڦDpJD/f-9ZÇMz"sګd֨QîdVoza1B=1r\>n7ǂ "NV!"uul
&;cb
"vi'$WX1XBlZ.8B|,fz?MvG?$ZcM/_Ns~'q,7~cIlW2JWqw
Q-"_Ԯ\ CXIN"Fb-6{){E^WCp/s$0?~i!O7cm@a;kFHQ~(1&|1/CQ)wv;X?6KNdC,K oJ\UNL6Nvn8#um_mS\ b勧=ش^_n8(AM!^7\`oc\GEw_c3V5$^꒱:.8Iꤊa=ɚdxt>Qt:<8}{N((|=Ɔm_33VDú7.
reޏ>%wYCjƣir}Jd;>=*S."
;%^b6'#~9|D{Q]&A|4>)9mTV{.ڢ}J]ʰtUAvAא^/.1["yѴ:oH5!p90şu@±O)\;MUAZ=z8fڳ4+@zLHFʽ`AI%4WpH}&\HszB"֞+$EI+ysx%I%_{HX%Q4i&(:O6uZDцilgE*g-7Nߦ!tRRڌx\v?wf4_ -"7kzu-;纖1(669o.[ad>u_
F](#ж
↝,CF&0ڀҍV@O^8iG3ȕp3+ kh
GZ$NJܩߴbu@Udh#jF1 frڌ=\[sa)˝dF!Dj=uF(1>rإEWn4#55_"04ƜŴ8G*WFoF)yzW;3UG)\ġc.`GL Y
tr
j vJ=aIx
m/ǘ!yv7&Alz =Ҙ_7OZ4zoӽGToJhж9Z)&A#@1>u'_F(:"}[o]Mhao4ɕ
j O3ڔ5^pw0jl0(W J7h9cAL&R鸉BxI*]$[gJu
Ih8:;Q^ov,T;g5vwDmGk0#J'C(}PI3sn[^Pռ\v妅ԕ4P䥬e-j\".|s~u-xmPAIhs& '{#u 틏&.9V
Y
i54Zx]phLv~p-ס1r'dthse!IV
thcC}O,Cpe'`ίGV]Mq6r,pˣH%lYL6=6sm)=\`%|'y~Nw=(Ξ.iKlDr&:w&6on5.[>{a'+ujJ!οor~ˋ\890Q4 UHyFt+h◒)kNU7)P- M 5P:貛#fe/;_c1$ZFX*S MKO.-*%G
U};%1Ʒaab(a8 [_}/U
m;ӥ{WMM9U^qU^[
o/]-sL( dT\a#QS*]IQ'|IBȇ{-ţd
p֣ pqPst}X]uLr9#flbl91 24Juvг8
?[Ii"wsEiXٵ~Z^Ջ[l#Bf42_喳vJnռ;se94x6g_|hSQ6ɔL
cDbc=l_n" ^ӚF*þHD737`{!p0'Di*3(tqzŸ4pF"y0T_tJK[!(ׯym#'Y֪|S[u2AF,q@ThstIܬAg4%N"uck-̹&܋\決KmDZZ[ws/\W_ļstIg
DP;]11G+T@*SiAj*4M
$*^؋Z)b{WzJ,SbJEq%ڊKlzila(%YVoo@*!VoҼ=jYTcbKu/œaûST<ݬt%FsC (pΝZ~(핵fA5_~-ĮtI[Fݮ(ee p>_WmjP2HW3>k|k6 .'WP鰧.Vcw#s֦%ou+Ǧ[}͆j
_亁яƿnƋ@R^()q
qmk"o)M P
JjKTئ9䮱yā,*j^8&KL0]|åLZbt
^Q3yr]|)W*ڞ
?'g^>jlIR~P),
;X\l|obTz
j(rq <@ pX\Bη``-٠A.= z6.1Z+j$0gg0_*Ԕ"G}+jNu\sWi$o@?,7ŅorQ&l{8x[eM?qDzԛN$:\[J!ڏƿw4ZPNe'NˌV%+('|!]>pM^?:#tՂ{[w=X'B@V5JF2ipQl}B|Zjk/*q+~jeI \'C[ dHW M]xYŞk*eȥ,RXdD#:E"O"O4z4+D;Ylj7I6@NITEo<kE3[c6qBۚTu[!&Fw)KnX%4bPT]$Mq5(]edH]oypJh&["Qr|z.t,W@nDU`}jIo0
fy_ίuvЎeֲl22S]W%dceiYN稳ücɏ+_cK|p. tml)ク?o|2Ab.Lrg,b{}so+ JKS}]ǝA>tC
7pɧYc)Qlu
b)vcνI%a0oBǙ:@Xl@D5
=8UߞFUG}M5ʆsKڕR*FJ{W(čsIzB
nШ{3hC!HW"O*;Y([*PōV2;Wwn_q)1qfèq4N 12SQUb r-EA6]̵ 9eXm8vTsu#w!AWk1@!Xy
y2V)X_O%IAyn"?RP
AcFHhA:ص=(WCLXy( ^ z0*1_zׯshK#)o2Nvs79E=ޢ!%fRT4%RIPMj~!Oi~@>喡M6=ƍ[M
}D 6.O/pkTA^`s|YUJ{ܭ:ՁSni(B:ܢE(hÉܦ32ŦGۄ6/k"'|<[tx#B!)1{>C(~wճM[ \2x4A?m7cjӪӨN
_GOCP i+\r)H23`v!$,Ex0%~;NIYgq
u#N$،FPLnP.SOb~G̏(rZ\ $AqP\T$qqD/¬tF+˭1hʖʁoGp%|hqdϛ_ru-vs~˶
7*aNBM(2Tq8LNBSz;M$yG%n
^$Tv`hAnَ@jz"7+nBo6ymH2tHM9nY\шw9=qlM}ΘKw]&\V|=^fg~x]"Ktf㜉KְG冰]2j)iRn UbtUJ]CUסpG]e`Ŋoh[I;,.5s~*0rCΨݪ^F;tnqF]Iʗ>/)
߿WL+ƮrQ^ny}ԠXjOTX/Nk9(|̅W.=V
amՓf{m,'RA|yQcYfbHrRR2QG0kě gQ^p*.҂'G%߇o([i37J)a_j]~6Ef;13t/5A.c^ҽ:'
!Kv=֠7Ր[6G.UcsxKӈ+\ؙn}{V87-{9xeQ,G^(H"`\3mHG~c\7M½Z{[31൸3Bs+sv pCO=
u7[g/+v$2[VK."/
g2n$.&d=~:X2y/%]I.nG>EɊ(;"z/#/"f'NG-egG"w#ӝaZ]F5PkDlOu)m`8ù\ne>#)2r{7"Sw=WL/ܶ
endstream
endobj
53 0 obj
<>/Subtype/Form/BBox[0 0 150.267 8.274]/Length 10/Filter/FlateDecode>>stream
H0
endstream
endobj
56 0 obj
<>
endobj
57 0 obj
<>/Subtype/Form/BBox[0 0 11.802 8.418]/Length 10/Filter/FlateDecode>>stream
H0
endstream
endobj
58 0 obj
<>stream
hn0{I`&hӪ=l%ګ1
Z
os9
5AIsT|@x<ߞ)Ί> K#u$r!n;-w7|A
OY&/sahrYT KU"o.l"x.oKPZ9N}{?8q &Nק ~xfNWgg5uj)nxT?
"O::+M
Y&pSn()B\.r r-Q:uk}}ZY|)LxK!~0gDi*Y`bŶ8Vy*O> QVowF>g*STk>UVڪqUl6]t"2\wHO}x}iċ'cL 2A& djQاtm̿ ]
endstream
endobj
29 0 obj
<>>>
endobj
59 0 obj
<>
endobj
60 0 obj
<>
endobj
51 0 obj
<>/Subtype/Form/BBox[0 0 11.802 8.427]/Length 10/Filter/FlateDecode>>stream
H0
endstream
endobj
61 0 obj
<