Figure 4

Web interface: Core genome presentation. Screenshot of the core genome calculation in the EDGAR web interface. In the upper part (A) one can choose a reference genome and a set of genomes to compare it with. The resulting table is shown in the lower part (B) of the page, in this case the core genome table for Xcc B100, Xca 756C, and Xcv 85-10. EDGAR displays the orthologous genes of all compared strains together with their gene function (as far as it is known) for every gene in the core genome. For every set of orthologous genes multiple alignments can be constructed of the genes itself and of their upstream region.