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Table 3 Evaluation of the clusters identified by ASTRO using ChIP-chip data.

From: Extracting biologically significant patterns from short time series gene expression data

 

ASTRO (OPSM)

TFs

A1

B1

C1

D1

E1

F1

ARO80

2/3%

(5e-02)

3/3%

(7e-02)

   

1/4%

(4e-02)

BAS1

    

1/3%

(8e-02)

 

CBF1

    

5/15%

(1e-02)

 

CHA4

   

4/4%

(9e-03)

  

DAL81

     

1/4%

(4e-03)

FHL1

25/36%

(3e-20)

43/50%

(3e-42)

3/10%

(1e-02)

19/25%

(1e-11)

  

GCR2

3/4%

(2e-02)

     

GCN4

    

3/9%

(7e-02)

 

MET31

    

1/3%

(7e-02)

 

MET32

    

4/12%

(6e-12)

 

MET4

    

1/3%

(7e-02)

 

SFP1

6/9%

(1e-05)

13/15%

(2e-14)

3/10%

(1e-02)

8/11%

(5e-08)

  
  1. Bold letter boxes correspond to statistically overrepresented transcription factors in that cluster. Each box contains: (a) the number of genes, (b) the percent of genes in the cluster associated with this transcription factor, and (c) the p-value (Fisher's exact test).
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BMC Bioinformatics

ISSN: 1471-2105

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