Table 4 M2 duration HMM sequence alignment modifications.
CT | Name | To TLS | -35 Hex | Spacer (16-20) | -10 Hex |
|---|---|---|---|---|---|
CT323 | infA | 145 | TTGACA | TTTTCTGTTTAGTCGA(16) | TATAAT |
149 | TTGTTT | GACATTTTCTGTTTAGTCGA(20) | TATAAT | ||
CT377 | ltuA | 74 | TGCAGA | GTTTTTATTTTAAATATGT(19) | TATAAT |
75 | TTGCAG | AGTTTTTATTTTAAATATGT(20) | TATAAT | ||
CT442 | crpA | 66 | GGGTTT | TTGAAAAAAACAAGTGTTT(19) | GTGTAG |
60 | TTGAAA | AAAACAAGTGTTTGTG(16) | TAGACT | ||
CT444b | omcA | 61 | AATTGC | TTTTATCGATAAAAGAAAC(19) | TTCAAG |
59 | TTGCTT | TTATCGATAAAAGAAAC(17) | TTCAAG | ||
CT518 | rl14 | 198 | CTGTTG | TTGTTCGAGTCGAAAGGG(18) | TATACT |
195 | TTGTTG | TTCGAGTCGAAAGGGTA(17) | TACTCG | ||
CT701 | secA_2 | 57 | TGTATA | GGCGCCTTTAAATAAGAGGG(20) | TAGGTT |
61 | TTGTTG | TATAGGCGCCTTTAAA(16) | TAAGAG |