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Table 2 Results of simulation study: comparison of RS, GSEA and GLAPA. P-values for the first gene set for the three methods (columns) and five different scenarios (rows) described in the text.

From: Comparative study of gene set enrichment methods

 

RS

GLAPA

GSEA

 

P-value

P-value1

P-value2

P-value

 

mean

se

mean

se

mean

se

mean

se

1

0.0177

0.0069

0.0678

0.0135

0.0173

0.0057

0.0002

0.0001

2

0.0005

0.0002

0.0152

0.0036

0.0007

0.0003

0.0002

0.0001

3

0.0004

0.0002

0.0064

0.0026

0.0003

0.0002

0

0

4

0.0126

0.0081

0.0073

0.0025

0.0002

9e-05

0.0166

0.0044

5

0

0

0.0001

8e-05

0

0

0.0877

0.0151

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BMC Bioinformatics

ISSN: 1471-2105

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